Detailed information of TA system TA261881

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): slvAT/RES(toxin)
• Location: 4462490..4463412
• Replicon: chromosome
• Accession: NZ_CP109603
• Organism: Pseudomonas putida strain SEH01

Toxin (Protein)

• Gene name: slvT
• Uniprot ID: -
• Locus tag: OGV19_RS20050
• Protein ID: WP_264310335.1
• Coordinates: 4462882..4463412 (+)
• Length: 177 a.a.

Antitoxin (Protein)

• Gene name: slvA
• Uniprot ID: -
• Locus tag: OGV19_RS20045
• Protein ID: WP_264310334.1
• Coordinates: 4462490..4462885 (+)
• Length: 132 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
OGV19_RS20025	4458334..4459530	-	1197	WP_264310330.1	monovalent cation:proton antiporter-2 (CPA2) family protein	-
OGV19_RS20030	4459567..4460385	-	819	WP_264310331.1	polyphosphate kinase 2	-
OGV19_RS20035	4460566..4461186	-	621	WP_264310332.1	isochorismate family cysteine hydrolase YcaC	-
OGV19_RS20040	4461277..4462296	-	1020	WP_264310333.1	transporter	-
OGV19_RS20045	4462490..4462885	+	396	WP_264310334.1	DUF2384 domain-containing protein	Antitoxin
OGV19_RS20050	4462882..4463412	+	531	WP_264310335.1	RES domain-containing protein	Toxin
OGV19_RS20055	4463711..4465141	+	1431	WP_264310336.1	aldehyde dehydrogenase family protein	-
OGV19_RS20060	4465308..4466525	+	1218	WP_264310337.1	DUF3422 domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• RES domain (11-165)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 177 a.a.
• Molecular weight: 19391.06 Da
• Isoelectric Point: 6.0834

>T261881 WP_264310335.1 NZ_CP109603:4462882-4463412 [Pseudomonas putida]
MKITSYLNLACYRLHTPKWAVAPMSGAGAATQGGRANRKGLEALYLSLEPVTAVAEFQQGSSFLPPGLLVSYSLTLDRVI
DFTGGYQEDWPAIWKDFFCDWRKIRFNEGVEPPSWLIGDLVLEVDCAGIVFESVAHPGGKNLVLYTDQLPAHGSLTVNDP
RGDLPKDQSSWHGPKR

Nucleotide

• Length: 531 bp

Antitoxin

Protein

• Length: 132 a.a.
• Molecular weight: 14972.02 Da
• Isoelectric Point: 5.6928

>AT261881 WP_264310334.1 NZ_CP109603:4462490-4462885 [Pseudomonas putida]
MASNAVLELHPTTFEGLMEALREVNRVMFSPERFLKVFSMDQQTFAARAHVHRNTVRNAPESEKIQAYIRDAVRVLRAVT
DMGTEMTKAIFWFKNEPLSTFDYKTAEEVVSEGRTEQLIAFLQSWEAGAQG

Nucleotide

• Length: 396 bp