Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) slvAT/RES(toxin)
Location 4462490..4463412 Replicon chromosome
Accession NZ_CP109603
Organism Pseudomonas putida strain SEH01

Toxin (Protein)


Gene name slvT Uniprot ID -
Locus tag OGV19_RS20050 Protein ID WP_264310335.1
Coordinates 4462882..4463412 (+) Length 177 a.a.

Antitoxin (Protein)


Gene name slvA Uniprot ID -
Locus tag OGV19_RS20045 Protein ID WP_264310334.1
Coordinates 4462490..4462885 (+) Length 132 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OGV19_RS20025 4458334..4459530 - 1197 WP_264310330.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
OGV19_RS20030 4459567..4460385 - 819 WP_264310331.1 polyphosphate kinase 2 -
OGV19_RS20035 4460566..4461186 - 621 WP_264310332.1 isochorismate family cysteine hydrolase YcaC -
OGV19_RS20040 4461277..4462296 - 1020 WP_264310333.1 transporter -
OGV19_RS20045 4462490..4462885 + 396 WP_264310334.1 DUF2384 domain-containing protein Antitoxin
OGV19_RS20050 4462882..4463412 + 531 WP_264310335.1 RES domain-containing protein Toxin
OGV19_RS20055 4463711..4465141 + 1431 WP_264310336.1 aldehyde dehydrogenase family protein -
OGV19_RS20060 4465308..4466525 + 1218 WP_264310337.1 DUF3422 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(11-165)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 177 a.a.        Molecular weight: 19391.06 Da        Isoelectric Point: 6.0834

>T261881 WP_264310335.1 NZ_CP109603:4462882-4463412 [Pseudomonas putida]
MKITSYLNLACYRLHTPKWAVAPMSGAGAATQGGRANRKGLEALYLSLEPVTAVAEFQQGSSFLPPGLLVSYSLTLDRVI
DFTGGYQEDWPAIWKDFFCDWRKIRFNEGVEPPSWLIGDLVLEVDCAGIVFESVAHPGGKNLVLYTDQLPAHGSLTVNDP
RGDLPKDQSSWHGPKR

Download         Length: 531 bp

Antitoxin


Download         Length: 132 a.a.        Molecular weight: 14972.02 Da        Isoelectric Point: 5.6928

>AT261881 WP_264310334.1 NZ_CP109603:4462490-4462885 [Pseudomonas putida]
MASNAVLELHPTTFEGLMEALREVNRVMFSPERFLKVFSMDQQTFAARAHVHRNTVRNAPESEKIQAYIRDAVRVLRAVT
DMGTEMTKAIFWFKNEPLSTFDYKTAEEVVSEGRTEQLIAFLQSWEAGAQG

Download         Length: 396 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References