Detailed information of TA system TA261879

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/ParE-YafN
• Location: 2980178..2980694
• Replicon: chromosome
• Accession: NZ_CP109603
• Organism: Pseudomonas putida strain SEH01

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: OGV19_RS13190
• Protein ID: WP_264313786.1
• Coordinates: 2980178..2980459 (-)
• Length: 94 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: OGV19_RS13195
• Protein ID: WP_264313787.1
• Coordinates: 2980449..2980694 (-)
• Length: 82 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
OGV19_RS13170	2975677..2975856	+	180	WP_264313782.1	hypothetical protein	-
OGV19_RS13175	2975860..2977269	-	1410	WP_264313783.1	amino acid permease	-
OGV19_RS13180	2977596..2979020	+	1425	WP_264313784.1	PLP-dependent aminotransferase family protein	-
OGV19_RS13185	2979201..2980121	+	921	WP_264313785.1	LysR family transcriptional regulator	-
OGV19_RS13190	2980178..2980459	-	282	WP_264313786.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
OGV19_RS13195	2980449..2980694	-	246	WP_264313787.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
OGV19_RS13200	2980864..2981406	+	543	WP_264313788.1	WYL domain-containing protein	-
OGV19_RS13205	2981420..2982154	-	735	WP_264313938.1	hypothetical protein	-
OGV19_RS13210	2982504..2983127	+	624	WP_264313789.1	glutathione S-transferase	-
OGV19_RS13215	2983274..2984038	-	765	WP_264313790.1	hypothetical protein	-
OGV19_RS13220	2984210..2985391	-	1182	WP_264313791.1	MFS transporter	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (5-83)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (10-76)

Sequences

Toxin

Protein

• Length: 94 a.a.
• Molecular weight: 11005.92 Da
• Isoelectric Point: 10.9154

>T261879 WP_264313786.1 NZ_CP109603:c2980459-2980178 [Pseudomonas putida]
MTYKLEFLPSALKEWGKLGHTVREQVKKKLRERLQAPRVQADALRELPNHFKIKLKASGYRLIYRVEDERIVVVVVSIGK
RERSEVYDSAKRR

Nucleotide

• Length: 282 bp

Antitoxin

Protein

• Length: 82 a.a.
• Molecular weight: 8735.20 Da
• Isoelectric Point: 4.4963

>AT261879 WP_264313787.1 NZ_CP109603:c2980694-2980449 [Pseudomonas putida]
MQNIFAGVAVSVSELKKNPTAVMSGAAGMPIAVLNHNRVMGYMVPAELYEAMMERLEDIELSELAKSRLGEKGVPVSLDD
L

Nucleotide

• Length: 246 bp