Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2980178..2980694 Replicon chromosome
Accession NZ_CP109603
Organism Pseudomonas putida strain SEH01

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OGV19_RS13190 Protein ID WP_264313786.1
Coordinates 2980178..2980459 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OGV19_RS13195 Protein ID WP_264313787.1
Coordinates 2980449..2980694 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OGV19_RS13170 2975677..2975856 + 180 WP_264313782.1 hypothetical protein -
OGV19_RS13175 2975860..2977269 - 1410 WP_264313783.1 amino acid permease -
OGV19_RS13180 2977596..2979020 + 1425 WP_264313784.1 PLP-dependent aminotransferase family protein -
OGV19_RS13185 2979201..2980121 + 921 WP_264313785.1 LysR family transcriptional regulator -
OGV19_RS13190 2980178..2980459 - 282 WP_264313786.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OGV19_RS13195 2980449..2980694 - 246 WP_264313787.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OGV19_RS13200 2980864..2981406 + 543 WP_264313788.1 WYL domain-containing protein -
OGV19_RS13205 2981420..2982154 - 735 WP_264313938.1 hypothetical protein -
OGV19_RS13210 2982504..2983127 + 624 WP_264313789.1 glutathione S-transferase -
OGV19_RS13215 2983274..2984038 - 765 WP_264313790.1 hypothetical protein -
OGV19_RS13220 2984210..2985391 - 1182 WP_264313791.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-76)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 11005.92 Da        Isoelectric Point: 10.9154

>T261879 WP_264313786.1 NZ_CP109603:c2980459-2980178 [Pseudomonas putida]
MTYKLEFLPSALKEWGKLGHTVREQVKKKLRERLQAPRVQADALRELPNHFKIKLKASGYRLIYRVEDERIVVVVVSIGK
RERSEVYDSAKRR

Download         Length: 282 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8735.20 Da        Isoelectric Point: 4.4963

>AT261879 WP_264313787.1 NZ_CP109603:c2980694-2980449 [Pseudomonas putida]
MQNIFAGVAVSVSELKKNPTAVMSGAAGMPIAVLNHNRVMGYMVPAELYEAMMERLEDIELSELAKSRLGEKGVPVSLDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References