Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2003776..2004047 | Replicon | chromosome |
| Accession | NZ_CP109601 | ||
| Organism | Escherichia coli strain TL-14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2003906..2004009 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2003776..2004047 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGV15_RS09605 | 2000331..2000993 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OGV15_RS09610 | 2001017..2001673 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OGV15_RS09615 | 2001775..2002005 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OGV15_RS09620 | 2002144..2002518 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| OGV15_RS09625 | 2002522..2003394 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| OGV15_RS09630 | 2003407..2003748 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2003776..2004047 | - | 272 | - | - | Antitoxin |
| - | 2003906..2004009 | + | 104 | - | - | Toxin |
| OGV15_RS09635 | 2004144..2004800 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| OGV15_RS09640 | 2004801..2004992 | - | 192 | WP_000457842.1 | YebW family protein | - |
| OGV15_RS09645 | 2005097..2005333 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OGV15_RS09650 | 2005451..2006892 | - | 1442 | Protein_1881 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T261854 NZ_CP109601:2003906-2004009 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT261854 NZ_CP109601:c2004047-2003776 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
