Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-YefM
Location 2083544..2083929 Replicon chromosome
Accession NC_017038
Organism Synechocystis sp. PCC 6803 substr. GT-I

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag SYNGTI_RS16890 Protein ID WP_080504056.1
Coordinates 2083825..2083929 (+) Length 35 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag SYNGTI_RS09840 Protein ID WP_010873096.1
Coordinates 2083544..2083828 (+) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SYNGTI_RS09805 2078603..2080438 + 1836 WP_010873091.1 hypothetical protein -
SYNGTI_RS09810 2080582..2081634 - 1053 WP_010873092.1 2OG-Fe(II) oxygenase -
SYNGTI_RS09815 2081861..2082088 + 228 WP_020862282.1 DUF2281 domain-containing protein -
SYNGTI_RS16885 2082134..2082478 + 345 WP_071822655.1 type II toxin-antitoxin system VapC family toxin -
SYNGTI_RS09825 2082640..2082924 + 285 WP_014407120.1 BrnT family toxin -
SYNGTI_RS09830 2082929..2083135 + 207 WP_010873094.1 hypothetical protein -
SYNGTI_RS09835 2083163..2083402 + 240 WP_010873095.1 hypothetical protein -
SYNGTI_RS09840 2083544..2083828 + 285 WP_010873096.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
SYNGTI_RS16890 2083825..2083929 + 105 WP_080504056.1 type II toxin-antitoxin system YoeB family toxin Toxin
SYNGTI_RS09845 2084023..2084847 - 825 WP_010873097.1 photosystem II manganese-stabilizing polypeptide -
SYNGTI_RS09850 2085074..2085451 + 378 WP_010873098.1 hypothetical protein -
SYNGTI_RS09860 2085848..2086210 - 363 WP_010873099.1 hypothetical protein -
SYNGTI_RS09865 2086398..2087741 + 1344 WP_010873100.1 3-phosphoshikimate 1-carboxyvinyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-32)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(19-83)


Sequences

Toxin        


Download         Length: 35 a.a.        Molecular weight: 4196.90 Da        Isoelectric Point: 8.5633

>T26180 WP_080504056.1 NC_017038:2083825-2083929 [Synechocystis sp. PCC 6803 substr. GT-I]
VKLIFSEQAWSDYLYWQQNDKKILKRINTLVELI

Download         Length: 105 bp

>T26180 NC_017038:2083825-2083929 [Synechocystis sp. PCC 6803 substr. GT-I]
GTGAAGCTAATTTTCTCTGAGCAAGCCTGGAGCGATTATCTTTACTGGCAACAAAACGACAAGAAAATACTTAAAAGAAT
CAATACCTTAGTTGAATTAATTTGA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10540.02 Da        Isoelectric Point: 4.1364

>AT26180 WP_010873096.1 NC_017038:2083544-2083828 [Synechocystis sp. PCC 6803 substr. GT-I]
MGETLPQQLPNMNAVSQIIAQQKLAAIMEQVCSDHVPTIITRDTQPSVVMISLEDYQSLEETAYLLRSPNNAQKLMSAIK
QLENDQGVERELLE

Download         Length: 285 bp

>AT26180 NC_017038:2083544-2083828 [Synechocystis sp. PCC 6803 substr. GT-I]
ATGGGGGAAACTTTGCCCCAACAATTGCCAAACATGAACGCAGTCAGCCAAATTATTGCACAACAAAAACTTGCAGCTAT
CATGGAGCAAGTATGTAGTGATCATGTTCCAACAATTATCACCAGGGATACCCAACCATCTGTCGTCATGATTTCCCTGG
AAGACTATCAGTCATTAGAAGAAACAGCATATCTACTACGTAGCCCGAACAATGCTCAAAAATTGATGTCGGCGATCAAG
CAATTAGAAAATGATCAAGGTGTCGAAAGGGAACTATTGGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References