Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) shpAB/BrnT-BrnA
Location 3939599..3940181 Replicon chromosome
Accession NZ_CP107573
Organism Pantoea dispersa strain JL.02bL

Toxin (Protein)


Gene name shpA Uniprot ID -
Locus tag OF384_RS18465 Protein ID WP_058771045.1
Coordinates 3939882..3940181 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name shpB Uniprot ID A0A8E1S1N8
Locus tag OF384_RS18460 Protein ID WP_058775497.1
Coordinates 3939599..3939901 (-) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OF384_RS18455 (OF384_18455) 3936213..3939593 + 3381 WP_264249816.1 cellulose synthase complex outer membrane protein BcsC -
OF384_RS18460 (OF384_18460) 3939599..3939901 - 303 WP_058775497.1 BrnA antitoxin family protein Antitoxin
OF384_RS18465 (OF384_18465) 3939882..3940181 - 300 WP_058771045.1 BrnT family toxin Toxin
OF384_RS18470 (OF384_18470) 3940405..3941409 - 1005 WP_031279620.1 glycosyl hydrolase family 8 -
OF384_RS18475 (OF384_18475) 3941419..3941865 - 447 WP_058758083.1 cellulose biosynthesis protein BcsD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(9-90)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(10-93)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11919.36 Da        Isoelectric Point: 6.9910

>T261750 WP_058771045.1 NZ_CP107573:c3940181-3939882 [Pantoea dispersa]
MQTEPEFEWDTTKAETNFRKHGIRFEVAARVFEDPFHLSVQDRYENGEYRWQTIGNVMGHVVILVAHTVRFETDVERIRI
ISARHATRIERRRYEQSQV

Download         Length: 300 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11490.15 Da        Isoelectric Point: 9.6528

>AT261750 WP_058775497.1 NZ_CP107573:c3939901-3939599 [Pantoea dispersa]
MSKVRFKRSELPPLTDKQQAELDALSRKQDSDIQCDDIAPLDDSFWQAAERGRFYRPVKTQASIRIDADILEWLKAPGKG
YQTRLNAILRAAMLRELQGK

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References