Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4755067..4755212 | Replicon | chromosome |
| Accession | NZ_CP107518 | ||
| Organism | Klebsiella pneumoniae strain CRKP_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4755103..4755205 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4755067..4755212 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH528_RS23320 | 4750197..4752257 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH528_RS23325 | 4752261..4752920 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH528_RS23330 | 4752999..4753229 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH528_RS23335 | 4753342..4753716 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH528_RS23340 | 4753720..4754589 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH528_RS23345 | 4754606..4754944 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4755067..4755212 | - | 146 | - | - | Antitoxin |
| - | 4755103..4755205 | + | 103 | - | - | Toxin |
| OH528_RS23350 | 4755580..4755723 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH528_RS23355 | 4755828..4756796 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH528_RS23360 | 4756953..4757606 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH528_RS23365 | 4757603..4757794 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH528_RS23370 | 4757892..4758131 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH528_RS23375 | 4758247..4759680 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261696 NZ_CP107518:4755103-4755205 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261696 NZ_CP107518:c4755212-4755067 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
