Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4744995..4745140 | Replicon | chromosome |
| Accession | NZ_CP107513 | ||
| Organism | Klebsiella pneumoniae strain CRKP_2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4745031..4745133 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4744995..4745140 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH512_RS23275 | 4740125..4742185 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH512_RS23280 | 4742189..4742848 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH512_RS23285 | 4742927..4743157 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH512_RS23290 | 4743270..4743644 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH512_RS23295 | 4743648..4744517 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH512_RS23300 | 4744534..4744872 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4744995..4745140 | - | 146 | - | - | Antitoxin |
| - | 4745031..4745133 | + | 103 | - | - | Toxin |
| OH512_RS23305 | 4745508..4745651 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH512_RS23310 | 4745756..4746724 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH512_RS23315 | 4746881..4747534 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH512_RS23320 | 4747531..4747722 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH512_RS23325 | 4747820..4748059 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH512_RS23330 | 4748175..4749608 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261671 NZ_CP107513:4745031-4745133 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261671 NZ_CP107513:c4745140-4744995 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
