Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2023331..2023476 | Replicon | chromosome |
| Accession | NZ_CP107441 | ||
| Organism | Klebsiella pneumoniae strain CRKP_16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2023367..2023469 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2023331..2023476 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH519_RS09910 | 2018461..2020521 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH519_RS09915 | 2020525..2021184 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH519_RS09920 | 2021263..2021493 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH519_RS09925 | 2021606..2021980 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH519_RS09930 | 2021984..2022853 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH519_RS09935 | 2022870..2023208 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2023331..2023476 | - | 146 | - | - | Antitoxin |
| - | 2023367..2023469 | + | 103 | - | - | Toxin |
| OH519_RS09940 | 2023844..2023987 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH519_RS09945 | 2024092..2025060 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH519_RS09950 | 2025217..2025870 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH519_RS09955 | 2025867..2026058 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH519_RS09960 | 2026156..2026395 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH519_RS09965 | 2026511..2027944 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261311 NZ_CP107441:2023367-2023469 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261311 NZ_CP107441:c2023476-2023331 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
