Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 705246..705391 | Replicon | chromosome |
| Accession | NZ_CP107426 | ||
| Organism | Klebsiella pneumoniae strain CRKP_19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 705253..705355 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 705246..705391 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH521_RS03550 | 700778..702211 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OH521_RS03555 | 702327..702566 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OH521_RS03560 | 702664..702855 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OH521_RS03565 | 702852..703505 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH521_RS03570 | 703662..704630 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH521_RS03575 | 704735..704878 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 705246..705391 | + | 146 | - | - | Antitoxin |
| - | 705253..705355 | - | 103 | - | - | Toxin |
| OH521_RS03580 | 705514..705852 | - | 339 | WP_002911404.1 | YebY family protein | - |
| OH521_RS03585 | 705869..706738 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH521_RS03590 | 706742..707116 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH521_RS03595 | 707229..707459 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH521_RS03600 | 707538..708197 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH521_RS03605 | 708201..710261 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261226 NZ_CP107426:c705355-705253 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261226 NZ_CP107426:705246-705391 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
