Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4719848..4719993 | Replicon | chromosome |
| Accession | NZ_CP107422 | ||
| Organism | Klebsiella pneumoniae strain CRKP_20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4719884..4719986 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4719848..4719993 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH530_RS23125 | 4714978..4717038 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH530_RS23130 | 4717042..4717701 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH530_RS23135 | 4717780..4718010 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH530_RS23140 | 4718123..4718497 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH530_RS23145 | 4718501..4719370 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH530_RS23150 | 4719387..4719725 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4719848..4719993 | - | 146 | - | - | Antitoxin |
| - | 4719884..4719986 | + | 103 | - | - | Toxin |
| OH530_RS23155 | 4720361..4720504 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH530_RS23160 | 4720609..4721577 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH530_RS23165 | 4721734..4722387 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH530_RS23170 | 4722384..4722575 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH530_RS23175 | 4722673..4722912 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH530_RS23180 | 4723028..4724461 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261214 NZ_CP107422:4719884-4719986 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261214 NZ_CP107422:c4719993-4719848 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
