Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2023329..2023474 | Replicon | chromosome |
| Accession | NZ_CP107417 | ||
| Organism | Klebsiella pneumoniae strain CRKP_21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2023365..2023467 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2023329..2023474 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH498_RS09905 | 2018459..2020519 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH498_RS09910 | 2020523..2021182 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH498_RS09915 | 2021261..2021491 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH498_RS09920 | 2021604..2021978 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH498_RS09925 | 2021982..2022851 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH498_RS09930 | 2022868..2023206 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2023329..2023474 | - | 146 | - | - | Antitoxin |
| - | 2023365..2023467 | + | 103 | - | - | Toxin |
| OH498_RS09935 | 2023842..2023985 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH498_RS09940 | 2024090..2025058 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH498_RS09945 | 2025215..2025868 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH498_RS09950 | 2025865..2026056 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH498_RS09955 | 2026154..2026393 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH498_RS09960 | 2026509..2027942 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261183 NZ_CP107417:2023365-2023467 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261183 NZ_CP107417:c2023474-2023329 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
