Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4756699..4756844 | Replicon | chromosome |
| Accession | NZ_CP107403 | ||
| Organism | Klebsiella pneumoniae strain CRKP_25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4756735..4756837 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4756699..4756844 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH516_RS23320 | 4751829..4753889 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH516_RS23325 | 4753893..4754552 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH516_RS23330 | 4754631..4754861 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH516_RS23335 | 4754974..4755348 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH516_RS23340 | 4755352..4756221 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH516_RS23345 | 4756238..4756576 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4756699..4756844 | - | 146 | - | - | Antitoxin |
| - | 4756735..4756837 | + | 103 | - | - | Toxin |
| OH516_RS23350 | 4757212..4757355 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH516_RS23355 | 4757460..4758428 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH516_RS23360 | 4758585..4759238 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH516_RS23365 | 4759235..4759426 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH516_RS23370 | 4759524..4759763 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH516_RS23375 | 4759879..4761312 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261119 NZ_CP107403:4756735-4756837 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261119 NZ_CP107403:c4756844-4756699 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
