Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1983418..1983563 | Replicon | chromosome |
| Accession | NZ_CP107398 | ||
| Organism | Klebsiella pneumoniae strain CRKP_26 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1983454..1983556 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1983418..1983563 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH520_RS09680 | 1978548..1980608 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH520_RS09685 | 1980612..1981271 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH520_RS09690 | 1981350..1981580 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH520_RS09695 | 1981693..1982067 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH520_RS09700 | 1982071..1982940 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH520_RS09705 | 1982957..1983295 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1983418..1983563 | - | 146 | - | - | Antitoxin |
| - | 1983454..1983556 | + | 103 | - | - | Toxin |
| OH520_RS09710 | 1983931..1984074 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH520_RS09715 | 1984179..1985147 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH520_RS09720 | 1985304..1985957 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH520_RS09725 | 1985954..1986145 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH520_RS09730 | 1986243..1986482 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH520_RS09735 | 1986598..1988031 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261088 NZ_CP107398:1983454-1983556 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261088 NZ_CP107398:c1983563-1983418 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
