Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 712867..713012 | Replicon | chromosome |
| Accession | NZ_CP107394 | ||
| Organism | Klebsiella pneumoniae strain CRKP_27 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 712874..712976 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 712867..713012 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH529_RS03610 | 708399..709832 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OH529_RS03615 | 709948..710187 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OH529_RS03620 | 710285..710476 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OH529_RS03625 | 710473..711126 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH529_RS03630 | 711283..712251 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH529_RS03635 | 712356..712499 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 712867..713012 | + | 146 | - | - | Antitoxin |
| - | 712874..712976 | - | 103 | - | - | Toxin |
| OH529_RS03640 | 713135..713473 | - | 339 | WP_002911404.1 | YebY family protein | - |
| OH529_RS03645 | 713490..714359 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH529_RS03650 | 714363..714737 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH529_RS03655 | 714850..715080 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH529_RS03660 | 715159..715818 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH529_RS03665 | 715822..717882 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261062 NZ_CP107394:c712976-712874 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261062 NZ_CP107394:712867-713012 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
