Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2009722..2009867 | Replicon | chromosome |
| Accession | NZ_CP107383 | ||
| Organism | Klebsiella pneumoniae strain CRKP_29 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2009758..2009860 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2009722..2009867 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH507_RS09870 | 2004852..2006912 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH507_RS09875 | 2006916..2007575 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH507_RS09880 | 2007654..2007884 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH507_RS09885 | 2007997..2008371 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH507_RS09890 | 2008375..2009244 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH507_RS09895 | 2009261..2009599 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2009722..2009867 | - | 146 | - | - | Antitoxin |
| - | 2009758..2009860 | + | 103 | - | - | Toxin |
| OH507_RS09900 | 2010235..2010378 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH507_RS09905 | 2010483..2011451 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH507_RS09910 | 2011608..2012261 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH507_RS09915 | 2012258..2012449 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH507_RS09920 | 2012547..2012786 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH507_RS09925 | 2012902..2014335 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261017 NZ_CP107383:2009758-2009860 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261017 NZ_CP107383:c2009867-2009722 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
