Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 91565..92208 Replicon plasmid unnamed1
Accession NZ_CP107380
Organism Klebsiella pneumoniae strain CRKP_30

Toxin (Protein)


Gene name vagD Uniprot ID D8L2J9
Locus tag OH532_RS27490 Protein ID WP_001044770.1
Coordinates 91565..91981 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID D5KTK7
Locus tag OH532_RS27495 Protein ID WP_001261282.1
Coordinates 91978..92208 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OH532_RS27470 (87668) 87668..87940 - 273 Protein_109 transposase -
OH532_RS27480 (88922) 88922..89944 - 1023 WP_000361404.1 helicase UvrD -
OH532_RS27485 (89929) 89929..91491 - 1563 WP_004206609.1 AAA family ATPase -
OH532_RS27490 (91565) 91565..91981 - 417 WP_001044770.1 type II toxin-antitoxin system VapC family toxin Toxin
OH532_RS27495 (91978) 91978..92208 - 231 WP_001261282.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
OH532_RS27500 (92165) 92165..92626 + 462 WP_014343465.1 hypothetical protein -
OH532_RS27505 (92787) 92787..93731 + 945 WP_011977810.1 hypothetical protein -
OH532_RS27510 (93768) 93768..94160 + 393 WP_011977811.1 hypothetical protein -
OH532_RS27515 (94218) 94218..94739 + 522 WP_013214008.1 hypothetical protein -
OH532_RS27520 (94785) 94785..94988 + 204 WP_011977813.1 hypothetical protein -
OH532_RS27525 (95018) 95018..96022 + 1005 WP_011977814.1 hypothetical protein -
OH532_RS27530 (96206) 96206..96985 + 780 WP_013214009.1 site-specific integrase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid rmtB / blaTEM-1B / blaCTX-M-65 / blaKPC-2 - 1..155820 155820


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-129)

Antitoxin

SpoVT-AbrB domain

(7-47)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 15106.52 Da        Isoelectric Point: 7.1084

>T261010 WP_001044770.1 NZ_CP107380:c91981-91565 [Klebsiella pneumoniae]
VNKTYMLDTCICSFIMREQPEAVLKRLEQAVLRGQRIVVSAITYSEMRFGATGPKASPRHVELVDAFCARLDAILPWDRA
AVDATTEIKVALRMAGTPIGPNDTAIAGHAIAAGAVLVTNNTREFERVPGLVLEDWVR

Download         Length: 417 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8756.83 Da        Isoelectric Point: 4.4692

>AT261010 WP_001261282.1 NZ_CP107380:c92208-91978 [Klebsiella pneumoniae]
MRTVSIFKNGNNRAIRLPRDLDFEGVSELEIVREGDSIILRPVRPTWGSFAQFEKADPDFMAEREDVVSDEGRFNL

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GYM2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GZG3

References