Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE-HTH |
Location | 930042..930736 | Replicon | chromosome |
Accession | NC_016901 | ||
Organism | Shewanella baltica OS678 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A9L1Q5 |
Locus tag | SBAL678_RS27430 | Protein ID | WP_012196688.1 |
Coordinates | 930042..930419 (+) | Length | 126 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | SBAL678_RS27435 | Protein ID | WP_012196689.1 |
Coordinates | 930431..930736 (+) | Length | 102 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SBAL678_RS27400 | 925435..927441 | + | 2007 | WP_012196683.1 | Clp protease ClpP | - |
SBAL678_RS27405 | 927522..927845 | + | 324 | WP_012196684.1 | DUF2190 family protein | - |
SBAL678_RS27410 | 927838..928182 | + | 345 | WP_012196685.1 | hypothetical protein | - |
SBAL678_RS27415 | 928186..928743 | + | 558 | WP_012196686.1 | hypothetical protein | - |
SBAL678_RS27420 | 928777..929202 | + | 426 | WP_012088287.1 | hypothetical protein | - |
SBAL678_RS27425 | 929199..929918 | + | 720 | WP_014357922.1 | hypothetical protein | - |
SBAL678_RS27430 | 930042..930419 | + | 378 | WP_012196688.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
SBAL678_RS27435 | 930431..930736 | + | 306 | WP_012196689.1 | DNA-binding transcriptional regulator | Antitoxin |
SBAL678_RS27440 | 930813..931397 | - | 585 | WP_012196690.1 | Rha family transcriptional regulator | - |
SBAL678_RS46745 | 931482..931670 | - | 189 | WP_080514246.1 | ash family protein | - |
SBAL678_RS27445 | 931713..932081 | - | 369 | WP_012196691.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 891750..944799 | 53049 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 13878.10 Da Isoelectric Point: 10.2058
>T26091 WP_012196688.1 NC_016901:930042-930419 [Shewanella baltica OS678]
VGRIFKTPDFVTWAKDEGVNDKALLDAVKEIEAGLIDANLGGNVIKKRVAREGQGKSGGFRTLLAFKSQDKSFFMFGFAK
NERENISVKEKAALKAMAKEFFAYDDKALIKAIKAKALYEIKQDV
VGRIFKTPDFVTWAKDEGVNDKALLDAVKEIEAGLIDANLGGNVIKKRVAREGQGKSGGFRTLLAFKSQDKSFFMFGFAK
NERENISVKEKAALKAMAKEFFAYDDKALIKAIKAKALYEIKQDV
Download Length: 378 bp
>T26091 NC_016901:930042-930419 [Shewanella baltica OS678]
GTGGGGCGAATATTCAAAACACCTGACTTTGTAACTTGGGCAAAAGACGAAGGTGTGAATGATAAAGCCTTGTTAGATGC
TGTAAAGGAAATTGAAGCCGGATTAATAGATGCAAATCTTGGTGGCAATGTTATTAAAAAACGTGTCGCGCGAGAAGGCC
AAGGTAAAAGTGGTGGATTTAGAACCCTTTTAGCCTTTAAATCGCAAGATAAGTCTTTCTTTATGTTTGGTTTTGCTAAA
AATGAAAGAGAGAATATTTCAGTTAAAGAAAAGGCAGCCTTGAAAGCTATGGCTAAAGAGTTTTTTGCTTACGATGATAA
AGCATTGATTAAAGCTATAAAAGCCAAAGCACTGTATGAGATTAAACAAGATGTATGA
GTGGGGCGAATATTCAAAACACCTGACTTTGTAACTTGGGCAAAAGACGAAGGTGTGAATGATAAAGCCTTGTTAGATGC
TGTAAAGGAAATTGAAGCCGGATTAATAGATGCAAATCTTGGTGGCAATGTTATTAAAAAACGTGTCGCGCGAGAAGGCC
AAGGTAAAAGTGGTGGATTTAGAACCCTTTTAGCCTTTAAATCGCAAGATAAGTCTTTCTTTATGTTTGGTTTTGCTAAA
AATGAAAGAGAGAATATTTCAGTTAAAGAAAAGGCAGCCTTGAAAGCTATGGCTAAAGAGTTTTTTGCTTACGATGATAA
AGCATTGATTAAAGCTATAAAAGCCAAAGCACTGTATGAGATTAAACAAGATGTATGA
Antitoxin
Download Length: 102 a.a. Molecular weight: 11151.12 Da Isoelectric Point: 10.3224
>AT26091 WP_012196689.1 NC_016901:930431-930736 [Shewanella baltica OS678]
MSRLLKSLHNTAKGLHDAGVMKTSTMREFDELCLPEIKVLTAAEIKRIRVANNVSQPVFAHCLNVSVSSVQKWEQGTRHP
DGPALTLLNLVKKQGMSLLMA
MSRLLKSLHNTAKGLHDAGVMKTSTMREFDELCLPEIKVLTAAEIKRIRVANNVSQPVFAHCLNVSVSSVQKWEQGTRHP
DGPALTLLNLVKKQGMSLLMA
Download Length: 306 bp
>AT26091 NC_016901:930431-930736 [Shewanella baltica OS678]
ATGAGTCGTTTACTTAAGTCACTGCATAATACCGCCAAAGGCTTGCATGATGCGGGTGTCATGAAAACATCGACCATGCG
TGAATTTGACGAACTTTGCTTACCTGAAATCAAAGTACTAACAGCTGCGGAAATTAAGCGCATTAGAGTCGCGAATAATG
TCAGCCAGCCTGTATTTGCCCATTGCTTAAATGTTTCAGTATCCAGTGTGCAAAAGTGGGAACAAGGCACAAGGCATCCT
GACGGTCCTGCCTTGACGCTGCTAAATCTCGTTAAAAAACAAGGTATGTCTTTGCTGATGGCTTGA
ATGAGTCGTTTACTTAAGTCACTGCATAATACCGCCAAAGGCTTGCATGATGCGGGTGTCATGAAAACATCGACCATGCG
TGAATTTGACGAACTTTGCTTACCTGAAATCAAAGTACTAACAGCTGCGGAAATTAAGCGCATTAGAGTCGCGAATAATG
TCAGCCAGCCTGTATTTGCCCATTGCTTAAATGTTTCAGTATCCAGTGTGCAAAAGTGGGAACAAGGCACAAGGCATCCT
GACGGTCCTGCCTTGACGCTGCTAAATCTCGTTAAAAAACAAGGTATGTCTTTGCTGATGGCTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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