Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4502406..4502551 | Replicon | chromosome |
| Accession | NZ_CP107352 | ||
| Organism | Klebsiella pneumoniae strain CRKP_35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4502442..4502544 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4502406..4502551 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH515_RS21620 | 4497536..4499596 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| OH515_RS21625 | 4499600..4500259 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH515_RS21630 | 4500338..4500568 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH515_RS21635 | 4500681..4501055 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH515_RS21640 | 4501059..4501928 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| OH515_RS21645 | 4501945..4502283 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4502406..4502551 | - | 146 | - | - | Antitoxin |
| - | 4502442..4502544 | + | 103 | - | - | Toxin |
| OH515_RS21650 | 4502919..4503062 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH515_RS21655 | 4503167..4504135 | - | 969 | WP_074195444.1 | VirK/YbjX family protein | - |
| OH515_RS21660 | 4504292..4504945 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH515_RS21665 | 4504942..4505133 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH515_RS21670 | 4505231..4505470 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH515_RS21675 | 4505586..4507019 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260883 NZ_CP107352:4502442-4502544 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT260883 NZ_CP107352:c4502551-4502406 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
