Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4856084..4856229 | Replicon | chromosome |
| Accession | NZ_CP107341 | ||
| Organism | Klebsiella pneumoniae strain CRKP_37 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4856120..4856222 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4856084..4856229 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH503_RS24055 | 4851214..4853274 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH503_RS24060 | 4853278..4853937 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH503_RS24065 | 4854016..4854246 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH503_RS24070 | 4854359..4854733 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH503_RS24075 | 4854737..4855606 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH503_RS24080 | 4855623..4855961 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4856084..4856229 | - | 146 | - | - | Antitoxin |
| - | 4856120..4856222 | + | 103 | - | - | Toxin |
| OH503_RS24085 | 4856597..4856740 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH503_RS24090 | 4856845..4857813 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH503_RS24095 | 4857970..4858623 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH503_RS24100 | 4858620..4858811 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH503_RS24105 | 4858909..4859148 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH503_RS24110 | 4859264..4860697 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260837 NZ_CP107341:4856120-4856222 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT260837 NZ_CP107341:c4856229-4856084 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
