Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4749873..4750018 | Replicon | chromosome |
| Accession | NZ_CP107312 | ||
| Organism | Klebsiella pneumoniae strain CRKP_41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4749909..4750011 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4749873..4750018 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH506_RS23355 | 4745003..4747063 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH506_RS23360 | 4747067..4747726 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH506_RS23365 | 4747805..4748035 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH506_RS23370 | 4748148..4748522 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH506_RS23375 | 4748526..4749395 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH506_RS23380 | 4749412..4749750 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4749873..4750018 | - | 146 | - | - | Antitoxin |
| - | 4749909..4750011 | + | 103 | - | - | Toxin |
| OH506_RS23385 | 4750386..4750529 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH506_RS23390 | 4750634..4751602 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH506_RS23395 | 4751759..4752412 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH506_RS23400 | 4752409..4752600 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH506_RS23405 | 4752698..4752937 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH506_RS23410 | 4753053..4754486 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260732 NZ_CP107312:4749909-4750011 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT260732 NZ_CP107312:c4750018-4749873 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
