Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2044342..2044487 | Replicon | chromosome |
| Accession | NZ_CP107308 | ||
| Organism | Klebsiella pneumoniae strain CRKP_42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2044378..2044480 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2044342..2044487 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH538_RS10010 | 2039472..2041532 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OH538_RS10015 | 2041536..2042195 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH538_RS10020 | 2042274..2042504 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH538_RS10025 | 2042617..2042991 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH538_RS10030 | 2042995..2043864 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH538_RS10035 | 2043881..2044219 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2044342..2044487 | - | 146 | - | - | Antitoxin |
| - | 2044378..2044480 | + | 103 | - | - | Toxin |
| OH538_RS10040 | 2044855..2044998 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OH538_RS10045 | 2045103..2046071 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH538_RS10050 | 2046228..2046881 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH538_RS10055 | 2046878..2047069 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OH538_RS10060 | 2047167..2047406 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OH538_RS10065 | 2047522..2048955 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260704 NZ_CP107308:2044378-2044480 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT260704 NZ_CP107308:c2044487-2044342 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
