Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2162208..2162353 | Replicon | chromosome |
| Accession | NZ_CP107297 | ||
| Organism | Klebsiella pneumoniae strain CRKP_44 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2162215..2162317 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2162208..2162353 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH517_RS11080 | 2157740..2159173 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OH517_RS11085 | 2159289..2159528 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OH517_RS11090 | 2159626..2159817 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OH517_RS11095 | 2159814..2160467 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OH517_RS11100 | 2160624..2161592 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OH517_RS11105 | 2161697..2161840 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2162208..2162353 | + | 146 | - | - | Antitoxin |
| - | 2162215..2162317 | - | 103 | - | - | Toxin |
| OH517_RS11110 | 2162476..2162814 | - | 339 | WP_002911404.1 | YebY family protein | - |
| OH517_RS11115 | 2162831..2163700 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OH517_RS11120 | 2163704..2164078 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OH517_RS11125 | 2164191..2164421 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OH517_RS11130 | 2164500..2165159 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OH517_RS11135 | 2165163..2167223 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260656 NZ_CP107297:c2162317-2162215 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT260656 NZ_CP107297:2162208-2162353 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
