Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2042173..2042441 | Replicon | chromosome |
| Accession | NZ_CP107284 | ||
| Organism | Escherichia coli strain SW4848 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2042300..2042403 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2042173..2042441 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OF379_RS09640 | 2038726..2039388 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OF379_RS09645 | 2039412..2040068 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OF379_RS09650 | 2040170..2040400 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OF379_RS09655 | 2040539..2040913 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| OF379_RS09660 | 2040917..2041789 | + | 873 | WP_263955241.1 | copper homeostasis membrane protein CopD | - |
| OF379_RS09665 | 2041802..2042143 | + | 342 | WP_000976485.1 | YebY family protein | - |
| - | 2042173..2042441 | - | 269 | - | - | Antitoxin |
| - | 2042300..2042403 | + | 104 | - | - | Toxin |
| OF379_RS09670 | 2042538..2043194 | + | 657 | WP_001559255.1 | protein-serine/threonine phosphatase | - |
| OF379_RS09675 | 2043195..2043386 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OF379_RS09680 | 2043491..2043727 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OF379_RS09685 | 2043845..2045284 | - | 1440 | WP_024186572.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2034861..2058281 | 23420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T260609 NZ_CP107284:2042300-2042403 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT260609 NZ_CP107284:c2042441-2042173 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
