Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4598416..4598596 | Replicon | chromosome |
| Accession | NZ_CP107262 | ||
| Organism | Leclercia adecarboxylata strain 2022CK-00320 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4598482..4598584 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4598416..4598596 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5937_RS22625 | 4594931..4595593 | - | 663 | WP_263950616.1 | exodeoxyribonuclease X | - |
| N5937_RS22630 | 4595618..4596274 | - | 657 | WP_103181103.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| N5937_RS22635 | 4596382..4596612 | - | 231 | WP_103180048.1 | DNA polymerase III subunit theta | - |
| N5937_RS22640 | 4596749..4597114 | + | 366 | WP_103180047.1 | CopC domain-containing protein YobA | - |
| N5937_RS22645 | 4597116..4597988 | + | 873 | WP_263950617.1 | copper homeostasis membrane protein CopD | - |
| N5937_RS22650 | 4598003..4598341 | + | 339 | WP_103180045.1 | YebY family protein | - |
| - | 4598416..4598596 | - | 181 | - | - | Antitoxin |
| - | 4598482..4598584 | + | 103 | - | - | Toxin |
| N5937_RS22655 | 4598741..4599688 | - | 948 | WP_236560459.1 | VirK/YbjX family protein | - |
| N5937_RS22660 | 4599865..4600509 | + | 645 | WP_263950618.1 | protein-serine/threonine phosphatase | - |
| N5937_RS22665 | 4600510..4600701 | - | 192 | WP_039030805.1 | YebW family protein | - |
| N5937_RS22670 | 4600806..4601045 | - | 240 | WP_263950619.1 | YebV family protein | - |
| N5937_RS22675 | 4601149..4602591 | - | 1443 | WP_263950620.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260578 NZ_CP107262:4598482-4598584 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 181 bp
>AT260578 NZ_CP107262:c4598596-4598416 [Leclercia adecarboxylata]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAA
AAGTGGCCTGAAAAAAAGCGT
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAA
AAGTGGCCTGAAAAAAAGCGT
