Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 98393..98937 Replicon chromosome
Accession NZ_CP107241
Organism Xanthomonas hortorum strain Oregano 108

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OEG85_RS00380 Protein ID WP_268213524.1
Coordinates 98638..98937 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OEG85_RS00375 Protein ID WP_115036791.1
Coordinates 98393..98650 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OEG85_RS00365 (OEG85_00365) 94991..97486 - 2496 WP_268213522.1 DEAD/DEAH box helicase -
OEG85_RS00370 (OEG85_00370) 97663..98325 + 663 WP_162498205.1 hemolysin III family protein -
OEG85_RS00375 (OEG85_00375) 98393..98650 + 258 WP_115036791.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OEG85_RS00380 (OEG85_00380) 98638..98937 + 300 WP_268213524.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OEG85_RS00385 (OEG85_00385) 98996..99520 - 525 WP_268213525.1 hypothetical protein -
OEG85_RS00390 (OEG85_00390) 99631..100587 + 957 WP_009597007.1 IS30 family transposase -
OEG85_RS00395 (OEG85_00395) 100771..101229 - 459 WP_268213526.1 helix-turn-helix domain-containing protein -
OEG85_RS00400 (OEG85_00400) 101449..102252 + 804 WP_268213527.1 SDR family NAD(P)-dependent oxidoreductase -
OEG85_RS00405 (OEG85_00405) 102367..102663 + 297 WP_268213529.1 YciI family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 99631..100587 956


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11453.22 Da        Isoelectric Point: 9.0225

>T260548 WP_268213524.1 NZ_CP107241:98638-98937 [Xanthomonas hortorum]
MAEIVWSEPALADLDVIADYIAIEDALAAATLVRRVFAHVEQLIEHPESGSRPQELKRSRYRQIVEPPCRVFYRVDGQRI
VVVHVMRSERSLRKSRLSR

Download         Length: 300 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9708.23 Da        Isoelectric Point: 8.6056

>AT260548 WP_115036791.1 NZ_CP107241:98393-98650 [Xanthomonas hortorum]
MRTELVTTLKRQASELLAAAERDKEPILITQHGLPSAYLVDVASYERMQQRMEILEGIARGEMAVAEGRTLSHEQAKQRM
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References