Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3289301..3289446 | Replicon | chromosome |
| Accession | NZ_CP107014 | ||
| Organism | Klebsiella pneumoniae strain K30821 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3289308..3289410 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3289301..3289446 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OF890_RS16645 (OF890_16645) | 3284833..3286266 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OF890_RS16650 (OF890_16650) | 3286382..3286621 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OF890_RS16655 (OF890_16655) | 3286719..3286910 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OF890_RS16660 (OF890_16660) | 3286907..3287560 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OF890_RS16665 (OF890_16665) | 3287717..3288685 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OF890_RS16670 (OF890_16670) | 3288790..3288933 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3289301..3289446 | + | 146 | - | - | Antitoxin |
| - | 3289308..3289410 | - | 103 | - | - | Toxin |
| OF890_RS16675 (OF890_16675) | 3289569..3289907 | - | 339 | WP_002911404.1 | YebY family protein | - |
| OF890_RS16680 (OF890_16680) | 3289924..3290793 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OF890_RS16685 (OF890_16685) | 3290797..3291171 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OF890_RS16690 (OF890_16690) | 3291284..3291514 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OF890_RS16695 (OF890_16695) | 3291593..3292252 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OF890_RS16700 (OF890_16700) | 3292256..3294316 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260424 NZ_CP107014:c3289410-3289308 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT260424 NZ_CP107014:3289301-3289446 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
