Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3353227..3353372 | Replicon | chromosome |
| Accession | NC_016845 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae HS11286 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3353234..3353336 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3353227..3353372 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPHS_33670 | 3348759..3350192 | + | 1434 | YP_005227667.1 | putative methyltransferase | - |
| KPHS_33680 | 3350239..3350547 | + | 309 | YP_005227668.1 | YebV family protein | - |
| KPHS_33690 | 3350645..3350836 | + | 192 | YP_005227669.1 | YebW family protein | - |
| KPHS_33700 | 3350833..3351486 | - | 654 | YP_005227670.1 | protein phosphatase 1 | - |
| KPHS_33710 | 3351643..3352611 | + | 969 | YP_005227671.1 | DUF535 domain-containing protein | - |
| KPHS_33720 | 3352716..3352859 | + | 144 | YP_005227672.1 | Ecr family regulatory small membrane protein | - |
| - | 3353227..3353372 | + | 146 | - | - | Antitoxin |
| - | 3353234..3353336 | - | 103 | - | - | Toxin |
| KPHS_33730 | 3353495..3353833 | - | 339 | YP_005227673.1 | YebY family protein | - |
| KPHS_33740 | 3353850..3354719 | - | 870 | YP_005227674.1 | putative resistance protein | - |
| KPHS_33750 | 3354723..3355097 | - | 375 | YP_005227675.1 | CopC domain-containing protein YobA | - |
| KPHS_33760 | 3355210..3355440 | + | 231 | YP_005227676.1 | DNA polymerase III subunit theta | - |
| KPHS_33770 | 3355519..3356178 | + | 660 | YP_005227677.1 | exodeoxyribonuclease X | - |
| KPHS_33780 | 3356182..3356631 | - | 450 | YP_005227678.1 | protease 2 | - |
| KPHS_33790 | 3356631..3358208 | - | 1578 | YP_005227679.1 | protease 2 | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T26021 NC_016845:c3353336-3353234 [Klebsiella pneumoniae subsp. pneumoniae HS11286]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT26021 NC_016845:3353227-3353372 [Klebsiella pneumoniae subsp. pneumoniae HS11286]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
