Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1944809..1944953 | Replicon | chromosome |
| Accession | NZ_CP106964 | ||
| Organism | Klebsiella variicola strain SY1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1944845..1944947 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1944809..1944953 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCU08_RS09415 | 1939939..1941999 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| OCU08_RS09420 | 1942003..1942662 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| OCU08_RS09425 | 1942741..1942971 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| OCU08_RS09430 | 1943085..1943459 | + | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| OCU08_RS09435 | 1943463..1944332 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| OCU08_RS09440 | 1944349..1944687 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1944809..1944953 | - | 145 | - | - | Antitoxin |
| - | 1944845..1944947 | + | 103 | - | - | Toxin |
| OCU08_RS09445 | 1945332..1945475 | - | 144 | WP_046881651.1 | Ecr family regulatory small membrane protein | - |
| OCU08_RS09450 | 1945579..1946547 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| OCU08_RS09455 | 1946703..1947356 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| OCU08_RS09460 | 1947353..1947544 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OCU08_RS09465 | 1947642..1947881 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OCU08_RS09470 | 1947997..1949430 | - | 1434 | WP_012967754.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260096 NZ_CP106964:1944845-1944947 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT260096 NZ_CP106964:c1944953-1944809 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
