Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 3499158..3499655 Replicon chromosome
Accession NZ_CP106929
Organism Escherichia coli strain MFDS1001074

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag OEG89_RS17370 Protein ID WP_001173343.1
Coordinates 3499482..3499655 (+) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag OEG89_RS17365 Protein ID WP_000398619.1
Coordinates 3499158..3499454 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OEG89_RS17345 (3495889) 3495889..3496608 - 720 WP_000611288.1 two-component system response regulator DcuR -
OEG89_RS17350 (3496605) 3496605..3498236 - 1632 WP_001216477.1 sensor histidine kinase -
OEG89_RS17355 (3498417) 3498417..3498647 + 231 WP_000371704.1 4Fe-4S mono-cluster protein YjdI -
OEG89_RS17360 (3498659) 3498659..3498931 + 273 WP_000405651.1 GNAT family N-acetyltransferase -
OEG89_RS17365 (3499158) 3499158..3499454 + 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
OEG89_RS17370 (3499482) 3499482..3499655 + 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
OEG89_RS17375 (3499774) 3499774..3501291 - 1518 WP_001295074.1 lysine--tRNA ligase -
OEG89_RS17380 (3501528) 3501528..3502985 - 1458 WP_000856829.1 dipeptide/tripeptide permease DtpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T260081 WP_001173343.1 NZ_CP106929:3499482-3499655 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT260081 WP_000398619.1 NZ_CP106929:3499158-3499454 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References