Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1091621..1091764 Replicon
Accession NC_016832
Organism Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1091660..1091762 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1091621..1091764 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1091621..1091764 - 144 NuclAT_0 - Antitoxin
- 1091660..1091762 + 103 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1085957..1092357 6400


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T26004 NC_016832:1091660-1091762 [Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT26004 NC_016832:c1091764-1091621 [Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References