Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012273..2012418 | Replicon | chromosome |
| Accession | NZ_CP106912 | ||
| Organism | Klebsiella pneumoniae strain BSIKPN-9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012309..2012411 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012273..2012418 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OE131_RS09870 (OE131_09870) | 2007403..2009463 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OE131_RS09875 (OE131_09875) | 2009467..2010126 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OE131_RS09880 (OE131_09880) | 2010205..2010435 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OE131_RS09885 (OE131_09885) | 2010548..2010922 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OE131_RS09890 (OE131_09890) | 2010926..2011795 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OE131_RS09895 (OE131_09895) | 2011812..2012150 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2012273..2012418 | - | 146 | - | - | Antitoxin |
| - | 2012309..2012411 | + | 103 | - | - | Toxin |
| OE131_RS09900 (OE131_09900) | 2012786..2012929 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OE131_RS09905 (OE131_09905) | 2013034..2014002 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OE131_RS09910 (OE131_09910) | 2014159..2014812 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OE131_RS09915 (OE131_09915) | 2014809..2015000 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OE131_RS09920 (OE131_09920) | 2015098..2015337 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OE131_RS09925 (OE131_09925) | 2015453..2016886 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T260015 NZ_CP106912:2012309-2012411 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT260015 NZ_CP106912:c2012418-2012273 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
