259922

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ygfYX/Cpta(toxin)
Location 3321834..3322503 Replicon chromosome
Accession NZ_CP106874
Organism Shewanella xiamenensis strain FH-1

Toxin (Protein)


Gene name ygfX Uniprot ID -
Locus tag OCF84_RS14640 Protein ID WP_257748774.1
Coordinates 3321834..3322274 (-) Length 147 a.a.

Antitoxin (Protein)


Gene name ygfY Uniprot ID -
Locus tag OCF84_RS14645 Protein ID WP_139122633.1
Coordinates 3322255..3322503 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OCF84_RS14615 (OCF84_14615) 3317254..3317727 - 474 WP_188869699.1 SoxR reducing system RseC family protein -
OCF84_RS14620 (OCF84_14620) 3317739..3318671 - 933 WP_037427579.1 MucB/RseB C-terminal domain-containing protein -
OCF84_RS14625 (OCF84_14625) 3318684..3319295 - 612 WP_055646699.1 RseA family anti-sigma factor -
OCF84_RS14630 (OCF84_14630) 3319337..3319915 - 579 WP_037415584.1 RNA polymerase sigma factor RpoE -
OCF84_RS14635 (OCF84_14635) 3320105..3321718 + 1614 WP_037415581.1 L-aspartate oxidase -
OCF84_RS14640 (OCF84_14640) 3321834..3322274 - 441 WP_257748774.1 hypothetical protein Toxin
OCF84_RS14645 (OCF84_14645) 3322255..3322503 - 249 WP_139122633.1 succinate dehydrogenase assembly factor 2 Antitoxin
OCF84_RS14650 (OCF84_14650) 3322588..3323496 - 909 WP_037415659.1 transcriptional activator NhaR -
OCF84_RS14655 (OCF84_14655) 3323591..3323977 - 387 WP_037415577.1 hypothetical protein -
OCF84_RS14660 (OCF84_14660) 3323980..3325149 - 1170 WP_037415576.1 Na+/H+ antiporter NhaA -
OCF84_RS14665 (OCF84_14665) 3325267..3326061 - 795 WP_037415574.1 thymidylate synthase -
OCF84_RS14670 (OCF84_14670) 3326061..3326867 - 807 WP_257748771.1 prolipoprotein diacylglyceryl transferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(5-134)

Antitoxin

Flavinator of succinate dehydrogenase

(7-77)


Sequences

Toxin        


Download         Length: 147 a.a.        Molecular weight: 16801.69 Da        Isoelectric Point: 7.9950

>T259922 WP_257748774.1 NZ_CP106874:c3322274-3321834 [Shewanella xiamenensis]
VAELRHSFSVKASFDQRLSLVVFVCVCSTSLLLWPETDTAVLHGLRAILAVLILGFLCSQLWQLRKWHCRFELNGQGEGW
LSTGEAFHVLPRTWVTPFICLVYYQSANKLHLLSLWADMFSDTDYRHLCRLLLKVKTQAVSQHELL

Download         Length: 441 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9627.21 Da        Isoelectric Point: 4.3440

>AT259922 WP_139122633.1 NZ_CP106874:c3322503-3322255 [Shewanella xiamenensis]
MELMNIARVRWACRRGMLELDVLFQPFVENVYQDLSDEDKALFIRLLECEDPELFAWFMGHEVCPDPELARMVVQVRGRA
AP

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References