Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 68027..68589 Replicon chromosome
Accession NZ_CP106869
Organism Xanthomonas sp. AM6

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OCJ37_RS00315 Protein ID WP_263111664.1
Coordinates 68272..68589 (+) Length 106 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OCJ37_RS00310 Protein ID WP_263111662.1
Coordinates 68027..68284 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OCJ37_RS00280 (OCJ37_00280) 63337..63582 + 246 WP_263111657.1 hypothetical protein -
OCJ37_RS00285 (OCJ37_00285) 64247..64699 + 453 WP_263111658.1 hypothetical protein -
OCJ37_RS00290 (OCJ37_00290) 64785..65466 - 682 Protein_57 hypothetical protein -
OCJ37_RS00295 (OCJ37_00295) 65661..66056 + 396 WP_263111659.1 hypothetical protein -
OCJ37_RS00300 (OCJ37_00300) 66438..67355 + 918 WP_263111660.1 hypothetical protein -
OCJ37_RS00305 (OCJ37_00305) 67527..67829 + 303 WP_263111661.1 hypothetical protein -
OCJ37_RS00310 (OCJ37_00310) 68027..68284 + 258 WP_263111662.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
OCJ37_RS00315 (OCJ37_00315) 68272..68589 + 318 WP_263111664.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OCJ37_RS00320 (OCJ37_00320) 68742..69146 + 405 WP_263111665.1 Na+:solute symporter -
OCJ37_RS00325 (OCJ37_00325) 69391..69801 + 411 WP_263111666.1 hypothetical protein -
OCJ37_RS00330 (OCJ37_00330) 70016..70780 - 765 WP_263111667.1 OBAP family protein -
OCJ37_RS00335 (OCJ37_00335) 71220..73484 + 2265 WP_263113762.1 TonB-dependent receptor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 58586..69801 11215


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-67)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 11838.65 Da        Isoelectric Point: 8.9974

>T259910 WP_263111664.1 NZ_CP106869:68272-68589 [Xanthomonas sp. AM6]
MAEIVWSEPALGDLDAIADYIALESPLAASEFVKRVFAHVGQLADHPESGSRPPELGRSRYRQIVEPPCRVFYRFDGHQV
FILHVMRSERILRKARLAPAAKQGK

Download         Length: 318 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9640.21 Da        Isoelectric Point: 10.1483

>AT259910 WP_263111662.1 NZ_CP106869:68027-68284 [Xanthomonas sp. AM6]
MRTELVTTLKRQATELLADIERDKQPILITQHGLPSAYLVDVESYQLMQQRMAVLEGIARGEQAIAEGRVASHAQAKKRL
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References