Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4241423..4241591 | Replicon | chromosome |
| Accession | NZ_CP106838 | ||
| Organism | Klebsiella michiganensis strain K5-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4241481..4241584 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4241423..4241591 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N6B35_RS20210 (N6B35_20210) | 4236550..4238610 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| N6B35_RS20215 (N6B35_20215) | 4238617..4239276 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| N6B35_RS20220 (N6B35_20220) | 4239355..4239585 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| N6B35_RS20225 (N6B35_20225) | 4239721..4240095 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| N6B35_RS20230 (N6B35_20230) | 4240100..4240969 | + | 870 | WP_047723551.1 | copper homeostasis membrane protein CopD | - |
| N6B35_RS20235 (N6B35_20235) | 4240986..4241324 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 4241423..4241591 | - | 169 | - | - | Antitoxin |
| - | 4241481..4241584 | + | 104 | - | - | Toxin |
| N6B35_RS20240 (N6B35_20240) | 4241709..4242668 | - | 960 | WP_047723552.1 | spore coat protein U domain-containing protein | - |
| N6B35_RS20245 (N6B35_20245) | 4242683..4245013 | - | 2331 | WP_047723554.1 | fimbria/pilus outer membrane usher protein | - |
| N6B35_RS20250 (N6B35_20250) | 4245016..4245780 | - | 765 | WP_025106133.1 | fimbria/pilus periplasmic chaperone | - |
| N6B35_RS20255 (N6B35_20255) | 4245799..4246317 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T259883 NZ_CP106838:4241481-4241584 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT259883 NZ_CP106838:c4241591-4241423 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
