Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 1214847..1215394 Replicon chromosome
Accession NZ_CP106831
Organism Empedobacter falsenii strain YWS9-3_T

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag OBA43_RS05730 Protein ID WP_284584129.1
Coordinates 1214847..1215146 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag OBA43_RS05735 Protein ID WP_284584130.1
Coordinates 1215146..1215394 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OBA43_RS05730 (OBA43_05730) 1214847..1215146 - 300 WP_284584129.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OBA43_RS05735 (OBA43_05735) 1215146..1215394 - 249 WP_284584130.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
OBA43_RS05740 (OBA43_05740) 1215829..1216188 + 360 WP_284584131.1 transposase -
OBA43_RS05745 (OBA43_05745) 1216434..1217339 + 906 WP_284584079.1 tyrosine-type recombinase/integrase -
OBA43_RS05750 (OBA43_05750) 1217318..1218418 + 1101 WP_284584081.1 IS91 family transposase -
OBA43_RS05755 (OBA43_05755) 1218628..1219095 - 468 WP_284584132.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-92)

Antitoxin

Antitoxin ParD

(1-76)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 12182.75 Da        Isoelectric Point: 4.5212

>T259868 WP_284584129.1 NZ_CP106831:c1215146-1214847 [Empedobacter falsenii]
MNYKISKQAEIDLENIWLYTFEEWSLEQADYYLDLIIDEIEYISENPKTGKDYNDVRKGYFRSRVKSHFIFYRINIKEEI
VEIIRILHQQMDIESHINE

Download         Length: 300 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9395.65 Da        Isoelectric Point: 9.8794

>AT259868 WP_284584130.1 NZ_CP106831:c1215394-1215146 [Empedobacter falsenii]
MAKNTSILLGDYFDNFINSQIKTGKYSSASEVVRAALRMFEHEETKKTELIKELKKGEKSGFSSDFNRESFKQNLHQKCS
AK

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References