Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 661231..661886 Replicon chromosome
Accession NZ_CP106826
Organism Neisseria gonorrhoeae strain 9464

Toxin (Protein)


Gene name vapC Uniprot ID Q5F882
Locus tag ND010_RS03510 Protein ID WP_003691083.1
Coordinates 661467..661886 (+) Length 140 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID Q5F881
Locus tag ND010_RS03505 Protein ID WP_003688410.1
Coordinates 661231..661467 (+) Length 79 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ND010_RS03475 (ND010_03475) 656365..656652 + 288 WP_003688407.1 hypothetical protein -
ND010_RS03480 (ND010_03480) 656724..657890 + 1167 WP_003701280.1 ADP-forming succinate--CoA ligase subunit beta -
ND010_RS03485 (ND010_03485) 657901..658791 + 891 WP_003693285.1 succinate--CoA ligase subunit alpha -
ND010_RS03490 (ND010_03490) 659174..659560 - 387 Protein_682 transposase -
ND010_RS03495 (ND010_03495) 659799..660200 + 402 WP_020997339.1 helix-turn-helix domain-containing protein -
ND010_RS03500 (ND010_03500) 660205..660783 + 579 WP_003688041.1 IS3 family transposase -
ND010_RS03505 (ND010_03505) 661231..661467 + 237 WP_003688410.1 type II toxin-antitoxin system antitoxin FitA Antitoxin
ND010_RS03510 (ND010_03510) 661467..661886 + 420 WP_003691083.1 type II toxin-antitoxin system toxin FitB Toxin
ND010_RS03515 (ND010_03515) 662035..663489 - 1455 WP_003701282.1 LutB/LldF family L-lactate oxidation iron-sulfur protein -
ND010_RS03520 (ND010_03520) 663486..664187 - 702 WP_003688414.1 lactate utilization protein C -
ND010_RS03525 (ND010_03525) 664184..664963 - 780 WP_003688416.1 (Fe-S)-binding protein -
ND010_RS03530 (ND010_03530) 665111..666652 + 1542 WP_003701286.1 MDR family MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-124)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 15306.65 Da        Isoelectric Point: 6.0798

>T259865 WP_003691083.1 NZ_CP106826:661467-661886 [Neisseria gonorrhoeae]
MILLDTNVISEPLRPQPNERVVAWLDSLILEDVYLSAITVAELRLGVALLLNGKKKNVLHERLEQSILPLFAGRILPFDE
PVAAIYAQIRSYAKTHGKEIAAADGYIAATAKQHSLTVATRDTGSFFAADVAVFNPWHD

Download         Length: 420 bp

Antitoxin


Download         Length: 79 a.a.        Molecular weight: 8433.57 Da        Isoelectric Point: 7.0129

>AT259865 WP_003688410.1 NZ_CP106826:661231-661467 [Neisseria gonorrhoeae]
MASVVIRNLSEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGSMLASIGQEIGGVELEDVRGRNTDNEVSL

Download         Length: 237 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2H1C
PDB 2BSQ
PDB 2H1O

Antitoxin

Source ID Structure
PDB 2H1C
PDB 2BSQ
PDB 2H1O
AlphaFold DB Q5F881

References