Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1367810..1368044 | Replicon | chromosome |
| Accession | NC_016822 | ||
| Organism | Shigella sonnei 53G | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1367940..1368043 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1367810..1368044 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSON53G_RS07020 | 1364365..1365027 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| SSON53G_RS07025 | 1365051..1365707 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| SSON53G_RS07030 | 1365809..1366039 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| SSON53G_RS07035 | 1366178..1366552 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| SSON53G_RS07040 | 1366556..1367428 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| SSON53G_RS07045 | 1367441..1367782 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1367810..1368044 | - | 235 | - | - | Antitoxin |
| - | 1367940..1368043 | + | 104 | - | - | Toxin |
| SSON53G_RS07055 | 1368175..1369251 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| SSON53G_RS28825 | 1370014..1370274 | - | 261 | WP_077447296.1 | excisionase | - |
| SSON53G_RS07065 | 1370381..1370569 | - | 189 | WP_000276803.1 | DUF1187 family protein | - |
| - | 1370385..1370563 | + | 179 | NuclAT_2 | - | - |
| - | 1370385..1370563 | + | 179 | NuclAT_2 | - | - |
| - | 1370385..1370563 | + | 179 | NuclAT_2 | - | - |
| - | 1370385..1370563 | + | 179 | NuclAT_2 | - | - |
| SSON53G_RS07070 | 1370620..1371717 | - | 1098 | WP_001173292.1 | AAA family ATPase | - |
| SSON53G_RS07075 | 1371723..1371905 | - | 183 | Protein_1323 | host-nuclease inhibitor Gam family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T25984 NC_016822:1367940-1368043 [Shigella sonnei 53G]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT25984 NC_016822:c1368044-1367810 [Shigella sonnei 53G]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
