Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2124620..2124765 | Replicon | chromosome |
| Accession | NZ_CP106786 | ||
| Organism | Klebsiella pneumoniae strain KP1161 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2124656..2124758 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2124620..2124765 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N9H76_RS10410 (N9H76_10410) | 2119750..2121810 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| N9H76_RS10415 (N9H76_10415) | 2121814..2122473 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| N9H76_RS10420 (N9H76_10420) | 2122552..2122782 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N9H76_RS10425 (N9H76_10425) | 2122895..2123269 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N9H76_RS10430 (N9H76_10430) | 2123273..2124142 | + | 870 | WP_023280292.1 | copper homeostasis membrane protein CopD | - |
| N9H76_RS10435 (N9H76_10435) | 2124159..2124497 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2124620..2124765 | - | 146 | - | - | Antitoxin |
| - | 2124656..2124758 | + | 103 | - | - | Toxin |
| N9H76_RS10440 (N9H76_10440) | 2125134..2125277 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| N9H76_RS10445 (N9H76_10445) | 2125382..2126350 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| N9H76_RS10450 (N9H76_10450) | 2126507..2127160 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| N9H76_RS10455 (N9H76_10455) | 2127157..2127348 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N9H76_RS10460 (N9H76_10460) | 2127446..2127685 | - | 240 | WP_002911393.1 | YebV family protein | - |
| N9H76_RS10465 (N9H76_10465) | 2127801..2129234 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T259818 NZ_CP106786:2124656-2124758 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT259818 NZ_CP106786:c2124765-2124620 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
