Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /Xre(antitoxin)
Location 4774959..4776118 Replicon chromosome
Accession NZ_CP106785
Organism Pseudomonas tohonis strain G5.110

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag N9L84_RS21780 Protein ID WP_263150781.1
Coordinates 4774959..4775711 (-) Length 251 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag N9L84_RS21785 Protein ID WP_111264584.1
Coordinates 4775747..4776118 (-) Length 124 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N9L84_RS21760 (N9L84_21760) 4770670..4771554 + 885 WP_263150778.1 metal-dependent hydrolase -
N9L84_RS21765 (N9L84_21765) 4771624..4772988 - 1365 WP_263154491.1 DNA recombination protein RmuC -
N9L84_RS21770 (N9L84_21770) 4773152..4773559 - 408 WP_111264581.1 SEL1-like repeat protein -
N9L84_RS21775 (N9L84_21775) 4773907..4774962 - 1056 WP_263150779.1 AraC family transcriptional regulator -
N9L84_RS21780 (N9L84_21780) 4774959..4775711 - 753 WP_263150781.1 RES family NAD+ phosphorylase Toxin
N9L84_RS21785 (N9L84_21785) 4775747..4776118 - 372 WP_111264584.1 DUF2384 domain-containing protein Antitoxin
N9L84_RS21790 (N9L84_21790) 4776242..4776724 + 483 WP_263150782.1 transcription elongation factor GreAB -
N9L84_RS21795 (N9L84_21795) 4776775..4777176 + 402 WP_263150783.1 hypothetical protein -
N9L84_RS21800 (N9L84_21800) 4777370..4777555 + 186 WP_228723486.1 hypothetical protein -
N9L84_RS21805 (N9L84_21805) 4777579..4778028 - 450 WP_263150784.1 S24 family peptidase -
N9L84_RS21810 (N9L84_21810) 4778130..4779728 - 1599 WP_263150786.1 M28 family metallopeptidase -
N9L84_RS21815 (N9L84_21815) 4780238..4780789 + 552 WP_263150788.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(58-206)

Antitoxin

Antitoxin Xre/MbcA/ParS-like, toxin-binding domain

(72-121)


Sequences

Toxin        


Download         Length: 251 a.a.        Molecular weight: 28153.17 Da        Isoelectric Point: 7.1064

>T259810 WP_263150781.1 NZ_CP106785:c4775711-4774959 [Pseudomonas tohonis]
MDIWTTCQGPQHVGPLRGRLVRLVESQEQVATLQLVDNLAEQALLEELIETSKPPLPRSAEPLHYLLKTPFRYPPLRWGS
RFGTVHEPSLFYAASRLETAMAEGAFYRFVLWSGMAVPPPSGRILSEHSSFEARFQVERGVQLQLPPFDRHAQALADPVD
YRASQALGAAMRAAGVEAFEYRSARCPLQGTNIALFTPEAFTERRPRNLTPWLCETTAEYVAFKHAQAPDTPRLFRMTQF
LIDGHLPQPA

Download         Length: 753 bp

Antitoxin


Download         Length: 124 a.a.        Molecular weight: 13570.78 Da        Isoelectric Point: 10.2920

>AT259810 WP_111264584.1 NZ_CP106785:c4776118-4775747 [Pseudomonas tohonis]
MSALSRPTLDPDAVLAKALLNTREQLGLTQQQLADIVGVHRTAITRWADSGGIRPQSKTGELALLLIRAYRALFALFGGN
LDDMRHFLRTENRHLGAVPLELMGQVQGLVRVVEYLDAIRGKI

Download         Length: 372 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References