Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014247..2014392 | Replicon | chromosome |
| Accession | NZ_CP106760 | ||
| Organism | Klebsiella pneumoniae strain KP0937 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014283..2014385 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014247..2014392 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N8627_RS09885 (N8627_09885) | 2009377..2011437 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| N8627_RS09890 (N8627_09890) | 2011441..2012100 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| N8627_RS09895 (N8627_09895) | 2012179..2012409 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N8627_RS09900 (N8627_09900) | 2012522..2012896 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N8627_RS09905 (N8627_09905) | 2012900..2013769 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| N8627_RS09910 (N8627_09910) | 2013786..2014124 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2014247..2014392 | - | 146 | - | - | Antitoxin |
| - | 2014283..2014385 | + | 103 | - | - | Toxin |
| N8627_RS09915 (N8627_09915) | 2014760..2014903 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| N8627_RS09920 (N8627_09920) | 2015008..2015976 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| N8627_RS09925 (N8627_09925) | 2016133..2016786 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| N8627_RS09930 (N8627_09930) | 2016783..2016974 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N8627_RS09935 (N8627_09935) | 2017072..2017311 | - | 240 | WP_002911393.1 | YebV family protein | - |
| N8627_RS09940 (N8627_09940) | 2017427..2018860 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T259752 NZ_CP106760:2014283-2014385 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT259752 NZ_CP106760:c2014392-2014247 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
