Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2818929..2819200 | Replicon | chromosome |
| Accession | NZ_CP106756 | ||
| Organism | Escherichia coli strain B-JRPT-4119 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2818967..2819070 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2818929..2819200 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N8153_RS13775 | 2816086..2817525 | + | 1440 | WP_001301343.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N8153_RS13780 | 2817643..2817879 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N8153_RS13785 | 2817984..2818175 | + | 192 | WP_001296140.1 | YebW family protein | - |
| N8153_RS13790 | 2818176..2818832 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2818929..2819200 | + | 272 | - | - | Antitoxin |
| - | 2818967..2819070 | - | 104 | - | - | Toxin |
| N8153_RS13795 | 2819227..2819568 | - | 342 | WP_000976472.1 | YebY family protein | - |
| N8153_RS13800 | 2819581..2820453 | - | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| N8153_RS13805 | 2820457..2820831 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N8153_RS13810 | 2820970..2821200 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N8153_RS13815 | 2821302..2821958 | + | 657 | WP_089613668.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N8153_RS13820 | 2821982..2822644 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T259718 NZ_CP106756:c2819070-2818967 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT259718 NZ_CP106756:2818929-2819200 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
