Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2194339..2194537 | Replicon | chromosome |
| Accession | NZ_CP106754 | ||
| Organism | Kosakonia sp. ML.JS2a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2194435..2194537 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2194339..2194537 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N7922_RS10525 (N7922_10525) | 2189576..2191651 | + | 2076 | WP_263100479.1 | oligopeptidase B | - |
| N7922_RS10530 (N7922_10530) | 2191633..2192295 | - | 663 | WP_263100480.1 | exodeoxyribonuclease X | - |
| N7922_RS10535 (N7922_10535) | 2192307..2192537 | - | 231 | WP_263100481.1 | DNA polymerase III subunit theta | - |
| N7922_RS10540 (N7922_10540) | 2192675..2193049 | + | 375 | WP_263100482.1 | CopC domain-containing protein YobA | - |
| N7922_RS10545 (N7922_10545) | 2193052..2193921 | + | 870 | WP_263100483.1 | copper homeostasis membrane protein CopD | - |
| N7922_RS10550 (N7922_10550) | 2193940..2194278 | + | 339 | WP_263100484.1 | YebY family protein | - |
| - | 2194339..2194537 | - | 199 | - | - | Antitoxin |
| - | 2194435..2194537 | + | 103 | - | - | Toxin |
| N7922_RS10555 (N7922_10555) | 2194691..2194852 | - | 162 | WP_263100485.1 | hypothetical protein | - |
| N7922_RS10560 (N7922_10560) | 2195053..2195997 | - | 945 | WP_263100486.1 | VirK/YbjX family protein | - |
| N7922_RS10565 (N7922_10565) | 2196171..2196815 | + | 645 | WP_263100487.1 | protein-serine/threonine phosphatase | - |
| N7922_RS10570 (N7922_10570) | 2196816..2197007 | - | 192 | WP_263100488.1 | YebW family protein | - |
| N7922_RS10575 (N7922_10575) | 2197113..2197352 | - | 240 | WP_061496641.1 | YebV family protein | - |
| N7922_RS10580 (N7922_10580) | 2197468..2198907 | - | 1440 | WP_263100489.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T259699 NZ_CP106754:2194435-2194537 [Kosakonia sp. ML.JS2a]
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 199 bp
>AT259699 NZ_CP106754:c2194537-2194339 [Kosakonia sp. ML.JS2a]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACAAAAGTGGTCAAAA
AAATCAGGTTATCGTCACGCTTCAAAATGTTAAAACCGC
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACAAAAGTGGTCAAAA
AAATCAGGTTATCGTCACGCTTCAAAATGTTAAAACCGC
