Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 1692758..1693286 Replicon chromosome
Accession NZ_CP106752
Organism Psychrobacter sp. SC65A.3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OEG80_RS07160 Protein ID WP_263240093.1
Coordinates 1692999..1693286 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID X0RAH8
Locus tag OEG80_RS07155 Protein ID WP_020443322.1
Coordinates 1692758..1693009 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OEG80_RS07140 (SC65A3_01448) 1688368..1688727 + 360 WP_011513459.1 DUF493 domain-containing protein -
OEG80_RS07145 (SC65A3_01449) 1689290..1691566 + 2277 WP_263240089.1 class 1a ribonucleoside-diphosphate reductase subunit alpha -
OEG80_RS07150 (SC65A3_01450) 1691699..1692586 + 888 WP_263240091.1 hypothetical protein -
OEG80_RS07155 (SC65A3_01451) 1692758..1693009 + 252 WP_020443322.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OEG80_RS07160 (SC65A3_01452) 1692999..1693286 + 288 WP_263240093.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
OEG80_RS07165 (SC65A3_01453) 1693357..1693740 + 384 WP_011513455.1 hypothetical protein -
OEG80_RS07170 (SC65A3_01454) 1693812..1694945 + 1134 WP_020443319.1 class Ia ribonucleoside-diphosphate reductase subunit beta -
OEG80_RS07175 (SC65A3_01455) 1695143..1695409 + 267 WP_011513453.1 class I ribonucleotide reductase maintenance protein YfaE -
OEG80_RS07180 (SC65A3_01456) 1695534..1696862 - 1329 WP_149492686.1 trypsin-like peptidase domain-containing protein -
OEG80_RS07185 (SC65A3_01457) 1697122..1697940 + 819 WP_263240095.1 Nif3-like dinuclear metal center hexameric protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-72)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11054.89 Da        Isoelectric Point: 10.5715

>T259692 WP_263240093.1 NZ_CP106752:1692999-1693286 [Psychrobacter sp. SC65A.3]
MTYNLEFHPLALKEWKKLAPSIQQQFKKKLQQRLSNPHVPASKLSGHTDTYKIKLRTVGYRLVYTVKDDVVVVYVLAVGK
RENNKVYDNLATRQP

Download         Length: 288 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9050.36 Da        Isoelectric Point: 4.2493

>AT259692 WP_020443322.1 NZ_CP106752:1692758-1693009 [Psychrobacter sp. SC65A.3]
MQPIFATQTASISELKANPSALIKQSDGESIAILNHNKPVAYLVSTDVFERMMEAMDDMALSQTVSARLNDGQIPIKVTL
DDL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB X0RAH8

References