Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2222706..2222874 | Replicon | chromosome |
| Accession | NZ_CP106658 | ||
| Organism | Klebsiella michiganensis strain 8BG | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2222764..2222867 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2222706..2222874 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N7918_RS10615 (N7918_10615) | 2217833..2219893 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| N7918_RS10620 (N7918_10620) | 2219900..2220559 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| N7918_RS10625 (N7918_10625) | 2220638..2220868 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| N7918_RS10630 (N7918_10630) | 2221004..2221378 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| N7918_RS10635 (N7918_10635) | 2221383..2222252 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| N7918_RS10640 (N7918_10640) | 2222269..2222607 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2222706..2222874 | - | 169 | - | - | Antitoxin |
| - | 2222764..2222867 | + | 104 | - | - | Toxin |
| N7918_RS10645 (N7918_10645) | 2222992..2223951 | - | 960 | WP_088168007.1 | spore coat protein U domain-containing protein | - |
| N7918_RS10650 (N7918_10650) | 2223966..2226296 | - | 2331 | WP_262191332.1 | fimbria/pilus outer membrane usher protein | - |
| N7918_RS10655 (N7918_10655) | 2226299..2227063 | - | 765 | WP_262191333.1 | fimbria/pilus periplasmic chaperone | - |
| N7918_RS10660 (N7918_10660) | 2227082..2227600 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T259594 NZ_CP106658:2222764-2222867 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT259594 NZ_CP106658:c2222874-2222706 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
