259567

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbE-relB/ParE(toxin)
Location 4266553..4266952 Replicon chromosome
Accession NZ_CP104992
Organism Rhizobium sp. CC-CFT758

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag N7E02_RS29080 Protein ID WP_286581316.1
Coordinates 4266553..4266834 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag N7E02_RS29085 Protein ID WP_286581317.1
Coordinates 4266824..4266952 (-) Length 43 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N7E02_RS29060 (N7E02_29060) 4261969..4262868 + 900 WP_286581314.1 AraC family transcriptional regulator -
N7E02_RS29065 (N7E02_29065) 4263029..4263787 + 759 WP_286581315.1 SDR family oxidoreductase -
N7E02_RS29070 (N7E02_29070) 4263969..4265197 + 1229 Protein_4160 urate hydroxylase PuuD -
N7E02_RS29075 (N7E02_29075) 4265235..4266556 + 1322 Protein_4161 guanine deaminase -
N7E02_RS29080 (N7E02_29080) 4266553..4266834 - 282 WP_286581316.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N7E02_RS29085 (N7E02_29085) 4266824..4266952 - 129 WP_286581317.1 prevent-host-death protein Antitoxin
N7E02_RS29090 (N7E02_29090) 4267351..4268295 + 945 WP_286581318.1 MYG1 family protein -
N7E02_RS29095 (N7E02_29095) 4268434..4269400 + 967 Protein_4165 quinone oxidoreductase -
N7E02_RS29100 (N7E02_29100) 4269532..4270676 + 1145 Protein_4166 alpha-hydroxy acid oxidase -
N7E02_RS29105 (N7E02_29105) 4270699..4271592 + 894 WP_286581319.1 TIGR03571 family LLM class oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 11045.87 Da        Isoelectric Point: 10.8061

>T259567 WP_286581316.1 NZ_CP104992:c4266834-4266553 [Rhizobium sp. CC-CFT758]
MSYRLEFLPSARKEWDKLGATLREQFRKKLAERLLNPRVPPDALRGMADHYKIKLRTAGYRLVYRVEDERVTVVVIAVGK
RERSEVYEIARNR

Download         Length: 282 bp

Antitoxin


Download         Length: 43 a.a.        Molecular weight: 4648.29 Da        Isoelectric Point: 3.7924

>AT259567 WP_286581317.1 NZ_CP104992:c4266952-4266824 [Rhizobium sp. CC-CFT758]
MAYMVPADTYEAMIDALDDHALVEIIKARADEKGVPVDIDEL

Download         Length: 129 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References