Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 2492210..2492757 Replicon chromosome
Accession NZ_CP104992
Organism Rhizobium sp. CC-CFT758

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag N7E02_RS20020 Protein ID WP_286579366.1
Coordinates 2492452..2492757 (+) Length 102 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag N7E02_RS20015 Protein ID WP_286579365.1
Coordinates 2492210..2492455 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N7E02_RS20000 (N7E02_20000) 2487375..2487925 + 551 Protein_2373 LemA family protein -
N7E02_RS20005 (N7E02_20005) 2487940..2489913 + 1974 WP_286579363.1 DUF2207 domain-containing protein -
N7E02_RS20010 (N7E02_20010) 2489954..2492107 + 2154 WP_286579364.1 glycine--tRNA ligase subunit beta -
N7E02_RS20015 (N7E02_20015) 2492210..2492455 + 246 WP_286579365.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
N7E02_RS20020 (N7E02_20020) 2492452..2492757 + 306 WP_286579366.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N7E02_RS20025 (N7E02_20025) 2492754..2493245 + 492 WP_286579367.1 DUF523 domain-containing protein -
N7E02_RS20030 (N7E02_20030) 2493414..2495246 - 1833 WP_286579368.1 methyl-accepting chemotaxis protein -
N7E02_RS20035 (N7E02_20035) 2495517..2495993 - 477 WP_286579369.1 plant virulence effector HPE1-like domain-containing protein -
N7E02_RS20040 (N7E02_20040) 2496106..2497377 - 1272 WP_286579370.1 phosphoribosylamine--glycine ligase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Antitoxin ParD

(6-72)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 11990.49 Da        Isoelectric Point: 6.8700

>T259563 WP_286579366.1 NZ_CP104992:2492452-2492757 [Rhizobium sp. CC-CFT758]
MKVYRLSPAAEADLDDIWNYTIINWSQEQAERYVSRLFDSFIKLGENPSLGRNANWIMSGYRRFRCGHHLIFYVTADDGQ
ANIVRILHEKVDVRRHFDDKE

Download         Length: 306 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9241.38 Da        Isoelectric Point: 4.6127

>AT259563 WP_286579365.1 NZ_CP104992:2492210-2492455 [Rhizobium sp. CC-CFT758]
MNKPVQVTIGEPLASFVDNEVESGRFASPDEVVAAGLRLLEEEQQKLEKLRELLIEGENSGEPRHVDRDEFLARMREKHA
R

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References