Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-Phd
Location 1725526..1726217 Replicon chromosome
Accession NZ_CP104965
Organism Devosia neptuniae strain A18/4-1

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag N8A98_RS11305 Protein ID WP_262171415.1
Coordinates 1725786..1726217 (+) Length 144 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag N8A98_RS11300 Protein ID WP_262171413.1
Coordinates 1725526..1725789 (+) Length 88 a.a.

Genomic Context

N8A98_RS11280N8A98_RS11285N8A98_RS11290N8A98_RS11295N8A98_RS11300N8A98_RS11305
Location: 1722817..1723293 (477 bp)
Type: Others
Protein ID: WP_262171408.1
Location: 1723322..1724176 (855 bp)
Type: Others
Protein ID: WP_262171410.1
Location: 1724261..1724653 (393 bp)
Type: Others
Protein ID: WP_262171411.1
Location: 1724750..1725372 (623 bp)
Type: Others
Protein ID: Protein_1737
Location: 1725526..1725789 (264 bp)
Type: Antitoxin
Protein ID: WP_262171413.1
Location: 1725786..1726217 (432 bp)
Type: Toxin
Protein ID: WP_262171415.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
N8A98_RS11280 (N8A98_11280)1722817..1723293+477WP_262171408.1GNAT family protein-
N8A98_RS11285 (N8A98_11285)1723322..1724176+855WP_262171410.1aminoglycoside phosphotransferase family protein-
N8A98_RS11290 (N8A98_11290)1724261..1724653+393WP_262171411.1DUF4440 domain-containing protein-
N8A98_RS11295 (N8A98_11295)1724750..1725372+623Protein_1737glycerol-3-phosphate 1-O-acyltransferase PlsY-
N8A98_RS11300 (N8A98_11300)1725526..1725789+264WP_262171413.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
N8A98_RS11305 (N8A98_11305)1725786..1726217+432WP_262171415.1type II toxin-antitoxin system VapC family toxinToxin

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-128)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-75)


Sequences

Toxin        


Download         Length: 144 a.a.        Molecular weight: 16059.49 Da        Isoelectric Point: 4.3576

>T259523 WP_262171415.1 NZ_CP104965:1725786-1726217 [Devosia neptuniae]
VSFLLDTNVLSEIRRPQPDQQVLTWLDQVDEDRTYLSVITIAEIARGVALMDDGRRRNELAQWLELDLPARFGDRILPVD
TQIALIWGKLLASTRKEGIGLSVMDGWIAATAIALQLVLVTRNTRDFENLPLTLLDPWSPPAA

Download         Length: 432 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9560.87 Da        Isoelectric Point: 5.8395

>AT259523 WP_262171413.1 NZ_CP104965:1725526-1725789 [Devosia neptuniae]
MSATKKQEAWTVANAKAHLSEVIERAQSEPQMITRNGTPSVVIVSVEEWNRKTERKGSLATFLLSSPLAGTELADARLLD
EPRDLAL

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References