Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2173595..2173763 | Replicon | chromosome |
| Accession | NZ_CP104925 | ||
| Organism | Klebsiella pasteurii strain AHM8C130-1I | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2173653..2173756 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2173595..2173763 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5863_RS10165 (N5863_10165) | 2168722..2170782 | + | 2061 | WP_032741886.1 | oligopeptidase B | - |
| N5863_RS10170 (N5863_10170) | 2170789..2171448 | - | 660 | WP_004122030.1 | exodeoxyribonuclease X | - |
| N5863_RS10175 (N5863_10175) | 2171527..2171757 | - | 231 | WP_274553922.1 | DNA polymerase III subunit theta | - |
| N5863_RS10180 (N5863_10180) | 2171893..2172267 | + | 375 | WP_004122028.1 | CopC domain-containing protein YobA | - |
| N5863_RS10185 (N5863_10185) | 2172272..2173141 | + | 870 | WP_004122027.1 | copper homeostasis membrane protein CopD | - |
| N5863_RS10190 (N5863_10190) | 2173158..2173496 | + | 339 | WP_004122026.1 | YebY family protein | - |
| - | 2173595..2173763 | - | 169 | - | - | Antitoxin |
| - | 2173653..2173756 | + | 104 | - | - | Toxin |
| N5863_RS10195 (N5863_10195) | 2173881..2174840 | - | 960 | WP_049114593.1 | spore coat protein U domain-containing protein | - |
| N5863_RS10200 (N5863_10200) | 2174855..2177185 | - | 2331 | WP_284658986.1 | fimbria/pilus outer membrane usher protein | - |
| N5863_RS10205 (N5863_10205) | 2177188..2177952 | - | 765 | WP_112166212.1 | molecular chaperone | - |
| N5863_RS10210 (N5863_10210) | 2177971..2178489 | - | 519 | WP_004122022.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T259509 NZ_CP104925:2173653-2173756 [Klebsiella pasteurii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT259509 NZ_CP104925:c2173763-2173595 [Klebsiella pasteurii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
