259384

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 4548926..4549442 Replicon chromosome
Accession NZ_CP104861
Organism Pseudomonas fragi strain D12

Toxin (Protein)


Gene name relE Uniprot ID A0A8I1FXC2
Locus tag N7D90_RS21105 Protein ID WP_019827368.1
Coordinates 4549155..4549442 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag N7D90_RS21100 Protein ID WP_261739795.1
Coordinates 4548926..4549165 (+) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N7D90_RS21080 (N7D90_21080) 4544021..4544932 - 912 WP_261739791.1 TauD/TfdA family dioxygenase -
N7D90_RS21085 (N7D90_21085) 4545117..4546334 - 1218 WP_261739792.1 benzoate/H(+) symporter BenE family transporter -
N7D90_RS21090 (N7D90_21090) 4546425..4547918 + 1494 WP_261739793.1 PLP-dependent aminotransferase family protein -
N7D90_RS21095 (N7D90_21095) 4548087..4548434 - 348 WP_261739794.1 DUF3077 domain-containing protein -
N7D90_RS21100 (N7D90_21100) 4548926..4549165 + 240 WP_261739795.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
N7D90_RS21105 (N7D90_21105) 4549155..4549442 + 288 WP_019827368.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N7D90_RS21110 (N7D90_21110) 4549563..4550774 + 1212 WP_261739796.1 CmpA/NrtA family ABC transporter substrate-binding protein -
N7D90_RS21115 (N7D90_21115) 4550789..4551364 + 576 WP_261739797.1 ANTAR domain-containing protein -
N7D90_RS21120 (N7D90_21120) 4551616..4552827 + 1212 WP_261739798.1 nitrate/nitrite transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-67)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11347.25 Da        Isoelectric Point: 10.3151

>T259384 WP_019827368.1 NZ_CP104861:4549155-4549442 [Pseudomonas fragi]
MTFDLEFDQRALKEWHKLADTVRLQFKSKLSEVLLNPRVEANRLRKLPDCYKIKLRSAGYRLIYQVIDQEVVVFVVAVDK
REHQAAYRKAQDRLK

Download         Length: 288 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9077.48 Da        Isoelectric Point: 4.8279

>AT259384 WP_261739795.1 NZ_CP104861:4548926-4549165 [Pseudomonas fragi]
MASINIRIDDELKARAYKELERLGVTPSELVRQALQYVAERGQLPFRPMLVTEEDEALINTVRERLAAPQRVKLTLDDL

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References