Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2098984..2099255 | Replicon | chromosome |
| Accession | NZ_CP104851 | ||
| Organism | Escherichia coli strain GYX208DH4E-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2099114..2099217 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2098984..2099255 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N6H16_RS10140 | 2095539..2096201 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N6H16_RS10145 | 2096225..2096881 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N6H16_RS10150 | 2096983..2097213 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N6H16_RS10155 | 2097352..2097726 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| N6H16_RS10160 | 2097730..2098602 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| N6H16_RS10165 | 2098615..2098956 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2098984..2099255 | - | 272 | - | - | Antitoxin |
| - | 2099114..2099217 | + | 104 | - | - | Toxin |
| N6H16_RS10170 | 2099352..2100008 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| N6H16_RS10175 | 2100009..2100200 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N6H16_RS10180 | 2100305..2100541 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N6H16_RS10185 | 2100659..2102098 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T259329 NZ_CP104851:2099114-2099217 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT259329 NZ_CP104851:c2099255-2098984 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
